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Merge upstream #24

Merged
merged 71 commits into from
Dec 4, 2024
Merged

Merge upstream #24

merged 71 commits into from
Dec 4, 2024

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connorjward
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@connorjward connorjward commented Nov 25, 2024

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jczhang07 and others added 30 commits October 29, 2024 14:45
Fix a typo

See merge request petsc/petsc!7973
….z, x+1.0.0) as compatible

This for example, enables conda to update MPICH version from say mpich-4.0.1 to mpich-4.2.0 without having to rebuild PETSc

This should restore the version checks added in !5260 which were lost in !7633.
kokkos vpbjacobi: Handle MPIAIJ matrices

See merge request petsc/petsc!7974
restore version range checks for MPICH, OpenMPI: accept versions [x.y.z, x+1.0.0) as compatible

See merge request petsc/petsc!7912
Minor housekeeping

See merge request petsc/petsc!7975
Many other invocations already do this, but there is one hardcoded absolute path left

The active SDK may be ahead of /usr/bin on $PATH, and /usr/bin may be an install-requesting proxy,
not the actual tool

e.g. builds on Azure macOS-13
…elease'

Add webpage for 2025 meeting with appropriate links

See merge request petsc/petsc!7970
resolve install_name_tool on $PATH

See merge request petsc/petsc!7976
…is conflicts with '-V' option in config/petsc_harness.sh

This conflict is triggered by 'make test V=0' as used by 'make alltests'

Ref:
balay@al:~/petsc$ make test search=ts_event_tests-ex3_V
Using MAKEFLAGS: -- search=ts_event_tests-ex3_V
       TEST arch-ci-linux-cmplx-single-arm/tests/counts/ts_event_tests-ex3_V.counts
 ok ts_event_tests-ex3_V+V-1e2_change5-0
 ok diff-ts_event_tests-ex3_V+V-1e2_change5-0
 ok ts_event_tests-ex3_V+V-1e2_change5-1
 ok diff-ts_event_tests-ex3_V+V-1e2_change5-1
 ok ts_event_tests-ex3_V+V-1e5_change5-0
 ok diff-ts_event_tests-ex3_V+V-1e5_change5-0
 ok ts_event_tests-ex3_V+V-1e5_change5-1
 ok diff-ts_event_tests-ex3_V+V-1e5_change5-1
 ok ts_event_tests-ex3_V+V-1e8_change5-0
 ok diff-ts_event_tests-ex3_V+V-1e8_change5-0
 ok ts_event_tests-ex3_V+V-1e8_change5-1
 ok diff-ts_event_tests-ex3_V+V-1e8_change5-1
balay@al:~/petsc$ make test search=ts_event_tests-ex3_V V=0
Using MAKEFLAGS: -- V=0 search=ts_event_tests-ex3_V
not ok diff-ts_event_tests-ex3_V+V-0_change5-0 * Error code: 1
*       2,12c2,3
*       < 0     1.      1.78245e-07     pass
*       < 0     1.05    4.52791e-08     pass
*       < 0     2.      1.44922e-07     pass
*       < 0     3.      1.08548e-07     pass
*       < 0     4.      4.04742e-07     pass
*       < 0     5.      2.7984e-06      pass
*       < 0     6.      2.24499e-07     pass
*       < 0     7.      1.88794e-07     pass
*       < 0     8.      2.82053e-07     pass
*       < 0     9.      5.73366e-07     pass
*       < 0     9.05    1.11373e-07     pass
*       ---
*       > 0     1.05    0.0500001       fail
*       > 0     9.05    8.      fail
...
…for appropriate versions easily at build time
Simplify veckok cpu/gpu logging, in addition to adding missing ones

See merge request petsc/petsc!7978
tests: switch '-V' option (to '-v') in src/ts/events/tests/ex3.c - this conflicts with '-V' option in config/petsc_harness.sh

See merge request petsc/petsc!7980
petsc4py: Add preallocatorPreallocate binding

See merge request petsc/petsc!7957
installation: clarify CUDA compatible Nvidia driver on Linux

See merge request petsc/petsc!7985
…to 'release'

petsc4py minor

See merge request petsc/petsc!7987
PKG-INFO has an invalid pin on the numpy version used to create the source distribution
Fix the broken check that AVX512 is available in configure.

See merge request petsc/petsc!7979
…ease'

add rule make getversion to PETSc so users make (or cmake) can check for...

See merge request petsc/petsc!7977
BarrySmith and others added 16 commits November 15, 2024 12:23
The previous code was part of Tao and was not a general purpose vector power function, it had highly algorithm specific handling in it for real numbers and fractional powers of negative numbers.

Reported-by: Peder Jørgensgaard Olesen
…' into 'release'

Add a link to the PETSc 2025 meeting discord channel to petsc.org

See merge request petsc/petsc!7996
Change the functionality of VecPow to be as expected.

See merge request petsc/petsc!8012
Accessing the FlowSolutionPointers arrays requires a different index
than the solution id
CGNS: Fix CGNSGetSolutionTime

See merge request petsc/petsc!8017
install: fix ranlib usage wrt self.executeShellCommand() as it can be 'ranlib -c'

See merge request petsc/petsc!8015
Add news item to petsc.org with BlueSky link

See merge request petsc/petsc!8018
…e/release' into 'release'

Fix manual page for SNESSetDivergenceTolerance() by elimiting mention of deprecated -1.

See merge request petsc/petsc!8019
Vec+Python: Fix reference counting in getDM()

See merge request petsc/petsc!8021
…'release'

Fix the VecNorm cached value sanity check for debug mode, it fails for a norm of NaN.

See merge request petsc/petsc!8011
website: redirect /manualpages to release/manualpages

See merge request petsc/petsc!8025
@connorjward connorjward force-pushed the connorjward/merge-upstream branch from 742dc75 to 191d542 Compare December 3, 2024 14:35
@connorjward connorjward merged commit 4354988 into firedrake Dec 4, 2024
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10 participants